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Flynn Taggart, or "Fly" for short is the protagonist of the original Doom novels and is based on the protagonist of Doom I and II (Doom Marine/aka B.J. Blazkowicz III), though his history deviated from the game stories midway. By the end of the series there are two Flynn Taggarts: the original and a copy of his mind in a simulator forced to replay the events of Doom I and II over and over again.
Knee Deep In Dead
His CO Lieutenant Weem orders his company to shoot monks, believing them to be be enemy soldiers incognito. However, Flynn tries to reason with him and, when he is unable to, he tries to punch him out in order to prevent the upcoming slaughter.
He is sent to Phobos to stand trial for assaulting a superior officer, but as he arrives, a distress message was sent from scientists working on the Two Gates, and Fox Company was sent to investigate sans Flynn, who was forced to stay behind. He was still able to incapacitate his two guards, "Ron and Ron 2", and make his way through the Phobos compounds alone.
The way Flynn's appearance is described in the Doom novels is identical to the original Doom games, though at times he removes his helmet.
Hell on Earth
Personality and Traits
He is somewhat cocky, rather intelligent, well-worded, mechanically gifted, loyal, and in some ways, arrogant. He is a faithful, yet long-suffering Catholic with a strong belief in God, having attended four years of Catholic school.
He ended up joining the Marines as a result of a strong belief in honor, and also because of his father, a person he held much disdain towards, a petty criminal who was frequently at odds with the law. Flynn's father never understood the concept of honor, as Flynn sees it, and also never understood why Flynn joined the Marines in the first place (nor did Flynn admit that he was one of the main reasons he did so; to not end up like him). He is also shown to have an aversion/hatred to officers, despite becoming one himself in the end (much to his own dismay).
Many a time Flynn claims to have a "little voice in the back of his head" (possibly his conscience) that he would at times communicate with, usually mentally, though there have been the rare and odd occurance of him physically "shushing" the voice.